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Model parameters files and control files share the same structural elements.
Some examples can be found in the data directory (*.model).
Although it is quite easy to understand the content of a model parameters file
without explanations when reading it, you might find it harder to produce
your own file from scratch and without guidance if you want to initialise
a substitution model with specific values. It is possible to use the simulate
program to generate a stub of this file for each model implemented in the
package. This skeleton can be modified easily to suit your needs.
htmlrefsimulate sectionUse_simulate for details.