WORKLIST ENTRIES (1):

HIVVPRVPX View alignment View Structure       HIV R-ORF/X-ORF protein signature
 Type of fingerprint: COMPOUND with 3  elements
Links:
   INTERPRO; IPR000012
   PFAM; PF00522 VPR

 Creation date 09-DEC-1995; UPDATE 28-JUL-1999

   1. TSUJIMOTO, H., HASEGAWA, A., MAKI, N., FUKASAWA, M., MIURA, T.,
   SPEIDEL, S., COOPER, R.W., MORIYAMA, E.N., GOJOBORI, T. AND HAYAMI, M.
   Sequence of a novel simian immunodeficiency virus from a wild-caught
   African mandrill.
   NATURE 341 539-541 (1989).

   2. HASEGAWA, A., TSUJIMOTO, H., MAKI, N., ISHIKAWA, K., MIURA, T., 
   FUKASAWA, M., MIKI, K. AND HAYAMI, M.
   Genomic divergence of HIV-2 from Ghana.
   AIDS RES.HUM.RETROVIRUSES 5 593-604 (1989). 

   HIV is the human retrovirus associated with AIDS (acquired immune
   deficiency syndrome), and SIV its simian counterpart. Three main groups
   of primate lentivirus are known, designated HIV-1, HIV-2/SIVMAC/SIVSM and
   SIVAGM. More recently, SIVMND has been suggested to represent a fourth 
   distinct group [1]. These groups are believed to have diverged from a
   common ancestor long before the spread of AIDS in humans.
  
   Genetic variation in HIV-1 and HIV-2 has been studied extensively, and
   the nucleotide sequences reported for several strains [2]. ORF analysis
   has revealed 2 open reading frames, yielding the so-called R- and X-ORF
   proteins, whose functions are unknown, but which show a high degree of
   sequence similarity. 
  
   HIVVPRVPX is a 3-element fingerprint that provides a signature for the
   HIV R-ORF and X-ORF proteins. The fingerprint was derived from an initial
   alignment of 8 sequences: the motifs were drawn from short conserved
   regions spanning the full alignment length. Three iterations on OWL26.3
   were required to reach convergence, at which point a true set comprising
   107 sequences was identified. Two partial matches were also found.
  
   An update on SPTR37_9f identified a true set of 266 sequences, and 5
   partial matches.

  SUMMARY INFORMATION
    266 codes involving  3 elements
      5 codes involving  2 elements

   COMPOSITE FINGERPRINT INDEX
  
    3| 266  266  266  
    2|   5    5    0  
   --+----------------
     |   1    2    3  

True positives..
 O42071         VPR_HV1BR      Q79252         Q79248         
 Q79245         Q79238         O71267         O71254         
 O73196         Q71999         Q79241         Q79243         
 Q79275         O71258         O91890         O36203         
 Q74775         Q74785         Q79251         Q74786         
 O36217         Q79234         Q79279         Q79672         
 O40218         VPR_HV1JR      Q89636         Q79788         
 Q72014         Q71881         O41800         Q72981         
 Q72989         VPR_HV1Y2      Q79264         Q71931         
 Q71925         Q71911         Q71904         Q71897         
 O42045         O36216         O36210         Q79235         
 Q79271         Q79242         O41768         P87921         
 Q75757         Q79257         Q79793         VPR_HV1N5      
 O71972         O42084         VPR_HV1RH      O70893         
 Q79269         VPR_HV1A2      O71967         O90092         
 O90100         Q79260         Q79281         Q79276         
 Q79239         VPR_HV1EL      O36202         O36205         
 O36206         Q79273         O36213         O89942         
 Q71918         O36215         Q79237         Q72492         
 Q79270         O70676         Q79280         P88158         
 VPR_HV1Z2      O71263         Q79253         O42058         
 Q74455         O72610         VPR_HV1MA      Q79244         
 O70888         O90075         Q79246         Q79266         
 Q79278         O90160         Q89838         Q74809         
 O91082         Q79277         O71273         VPR_HV1OY      
 O12160         Q71815         O71277         Q89677         
 Q89494         Q74837         O41785         Q79233         
 Q79263         Q73369         Q74784         Q79249         
 Q79247         VPR_HV1MN      Q79256         O36218         
 Q71944         O42054         Q79262         Q73332         
 Q79267         O92296         Q79236         O89928         
 Q79259         O36212         O42035         O42036         
 O42077         O36208         O90084         O72615         
 P88436         Q79265         Q89588         P88152         
 Q79255         Q71938         Q74772         Q74773         
 Q79284         O36207         Q79268         Q79274         
 O41776         O89935         O36209         Q79282         
 Q74781         Q74776         O70898         Q97061         
 Q79254         O91897         Q72500         Q77693         
 VPR_HV1SC      Q74780         Q79258         O36204         
 Q74777         Q74779         Q77375         Q89467         
 O91140         P88434         Q89493         O90066         
 Q76577         O91148         O90059         Q75004         
 VPR_SIVCZ      VPR_HV1B1      VPR_HV1B5      P89694         
 O91136         O91152         Q79668         O36211         
 P89843         Q74778         O91132         O91162         
 O91166         O91144         O91170         O91180         
 VPR_SIVS4      O11785         Q07392         Q88017         
 VPR_SIVMK      VPR_SIVML      Q85605         VPR_SIVSP      
 Q89638         P89157         VPR_SIVM1      Q04270         
 O57061         Q88146         O90320         O12332         
 Q87957         Q87966         Q76624         VPR_HV2D2      
 VPR_HV2SB      Q76637         VPR_HV2NZ      VPR_HV2CA      
 VPR_HV2BE      VPR_HV2RO      Q74231         VPR_HV2D1      
 VPR_HV2G1      VPR_HV2KR      VPR_HV2ST      Q88101         
 O12384         O12383         VPX_SIVA1      Q87110         
 VPX_SIVM1      Q89552         Q88064         Q88050         
 Q88020         Q07393         Q04273         Q85604         
 VPX_SIVML      VPX_SIVMK      Q88057         VPX_HV2G1      
 Q88068         VPX_SIVAG      VPX_HV2D1      Q89721         
 Q87481         VPX_HV2BE      P88144         VPX_SIVAT      
 Q88058         Q87483         VPX_SIVAI      VPX_HV2ST      
 VPX_HV2CA      VPX_SIVS4      Q88145         VPX_HV2KR      
 O90319         VPX_HV2SB      P89156         Q76623         
 VPX_HV2RO      Q89827         O90275         VPX_HV2D2      
 Q76636         Q88137         VPX_SIVSP      Q88125         
 Q88131         VPR_SIVGB      
Subfamily:  Codes involving 2 elements
 Subfamily True positives..
 O36214         O90175         Q87624         VPX_HV2NZ      
 DYHC_PARTE     


  PROTEIN TITLES
   O42071           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1BR        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q79252           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79248           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79245           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79238           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O71267           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O71254           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O73196           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q71999           PATIENT 3799(9-93), CLONE 12 ACCESSORY REGION GENES, CDS - H
   Q79241           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79243           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79275           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O71258           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91890           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36203           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74775           ISOLATE 890-10, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74785           ISOLATE VR-1, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79251           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74786           ISOLATE VR-2, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36217           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79234           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79279           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79672           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O40218           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1JR        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q89636           PATIENT 3799(9-93), CLONE 13 ACCESSORY REGION GENES, CDS - H
   Q79788           VPR POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q72014           PATIENT 3799(12-88), CLONE 22 ACCESSORY REGION GENES, CDS - 
   Q71881           PATIENT 3799(9-93), CLONE 15, ACCESSORY REGION GENES, COMPLE
   O41800           HIV-1 ISOLATE 92NG083 FROM NIGERIA COMPLETE GENOME - HUMAN I
   Q72981           IMMUNODEFICIENCY VIRUS HIV-1, CLONE ACH320.2A.1.2, COMPLETE 
   Q72989           IMMUNODEFICIENCY VIRUS HIV-1, CLONE ACH320.2A.2.1, COMPLETE 
   VPR_HV1Y2        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q79264           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q71931           CNTRL 1, CLONE 6, ACCESSORY REGION GENES, COMPLETE CDS - HUM
   Q71925           CNTRL 1, CLONE 5, ACCESSORY REGION GENES, COMPLETE CDS - HUM
   Q71911           CNTRL 1, CLONE 3, ACCESSORY REGION GENES, COMPLETE CDS - HUM
   Q71904           CNTRL 1, CLONE 2, ACCESSORY REGION GENES, COMPLETE CDS - HUM
   Q71897           CNTRL 1, CLONE 1, ACCESSORY REGION GENES, COMPLETE CDS - HUM
   O42045           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36216           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36210           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79235           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79271           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79242           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O41768           HIV-1 ISOLATE 84ZR085 FROM ZAIRE COMPLETE GENOME - HUMAN IMM
   P87921           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q75757           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79257           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79793           ISOLATE NY5, COMPLETE GENOME. INFECTIOUS SINGLE LTR MOLECULA
   VPR_HV1N5        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   O71972           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O42084           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1RH        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   O70893           HIV-1 ISOLATE 93BR029 FROM BRAZIL COMPLETE GENOME - HUMAN IM
   Q79269           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1A2        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   O71967           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O90092           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O90100           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79260           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79281           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79276           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79239           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1EL        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   O36202           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36205           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36206           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79273           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36213           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O89942           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q71918           CNTRL 1, CLONE 4, ACCESSORY REGION GENES, COMPLETE CDS - HUM
   O36215           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79237           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q72492           CLADE B, PROVIRAL CLONE - HUMAN IMMUNODEFICIENCY VIRUS TYPE 
   Q79270           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O70676           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79280           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   P88158           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1Z2        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   O71263           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79253           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O42058           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74455           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O72610           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1MA        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q79244           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O70888           HIV-1 ISOLATE 93BR020 FROM BRAZIL COMPLETE GENOME - HUMAN IM
   O90075           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79246           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79266           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79278           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O90160           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q89838           PATIENT 3799(12-88), CLONE 23 ACCESSORY REGION GENES, CDS - 
   Q74809           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91082           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79277           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O71273           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1OY        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   O12160           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q71815           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O71277           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q89677           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q89494           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74837           COMPLETE GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O41785           HIV-1 ISOLATE 94UG114 FROM UGANDA COMPLETE GENOME - HUMAN IM
   Q79233           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79263           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q73369           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74784           ISOLATE LW87-2, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79249           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79247           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1MN        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q79256           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36218           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q71944           CNTRL 2, CLONE 19, ACCESSORY REGION GENES, COMPLETE CDS - HU
   O42054           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79262           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q73332           C18MBC, COMPLETE SEQUENCE - HUMAN IMMUNODEFICIENCY VIRUS TYP
   Q79267           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O92296           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79236           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O89928           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79259           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36212           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O42035           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O42036           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O42077           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36208           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O90084           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O72615           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   P88436           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79265           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q89588           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   P88152           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79255           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q71938           CNTRL 2, CLONE 18, ACCESSORY REGION GENES, COMPLETE CDS - HU
   Q74772           ISOLATE 1188-3, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74773           ISOLATE 1188-4, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79284           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36207           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79268           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79274           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O41776           HIV-1 ISOLATE 92RW009 FROM RWANDA COMPLETE GENOME - HUMAN IM
   O89935           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36209           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79282           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74781           ISOLATE LIFI-1, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74776           ISOLATE 890-14, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O70898           HIV-1 ISOLATE 90CR056 FROM CENTRAL AFRICAN REPUBLIC, COMPLET
   Q97061           STRAIN CM240, COMPLETE PROVIRAL GENOME - HUMAN IMMUNODEFICIE
   Q79254           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91897           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q72500           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q77693           VPR POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_HV1SC        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q74780           ISOLATE 896-2, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79258           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36204           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74777           ISOLATE 891-1, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74779           ISOLATE 894-2, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q77375           VPR POLYPROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q89467           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91140           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   P88434           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q89493           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O90066           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q76577           (CLONE PNL432) PROVIRAL VPR RNA, COMPLETE CDS - HUMAN IMMUNO
   O91148           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O90059           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q75004           VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_SIVCZ        VPR PROTEIN (R ORF PROTEIN) - CHIMPANZEE IMMUNODEFICIENCY VI
   VPR_HV1B1        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   VPR_HV1B5        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   P89694           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91136           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91152           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q79668           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O36211           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   P89843           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q74778           ISOLATE 894-1, VPR - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91132           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91162           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91166           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91144           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91170           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O91180           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   VPR_SIVS4        VPR PROTEIN (R ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   O11785           VPR PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   Q07392           VPR PROTEIN (R ORF PROTEIN) - CHIMPANZEE IMMUNODEFICIENCY VI
   Q88017           VPR PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   VPR_SIVMK        VPR PROTEIN (R ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   VPR_SIVML        VPR PROTEIN (R ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q85605           R (AA 1-97) - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 4.
   VPR_SIVSP        VPR PROTEIN (R ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q89638           VPR PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   P89157           STRAIN SIVSME543, COMPLETE GENOME - CHIMPANZEE IMMUNODEFICIE
   VPR_SIVM1        VPR PROTEIN (R ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q04270           VPR PROTEIN (R ORF PROTEIN) - CHIMPANZEE IMMUNODEFICIENCY VI
   O57061           VPR PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   Q88146           VPR PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   O90320           VPR - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
   O12332           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
   Q87957           VPR PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   Q87966           VPR PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   Q76624           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
   VPR_HV2D2        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   VPR_HV2SB        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q76637           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
   VPR_HV2NZ        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   VPR_HV2CA        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   VPR_HV2BE        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   VPR_HV2RO        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q74231           TRANSCRIPTIONAL ACTIVATOR - HUMAN IMMUNODEFICIENCY VIRUS TYP
   VPR_HV2D1        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   VPR_HV2G1        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   VPR_HV2KR        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   VPR_HV2ST        VPR PROTEIN (R ORF PROTEIN) - HUMAN IMMUNODEFICIENCY VIRUS T
   Q88101           (CLONE 2) GAG, POL, VIF, VPR, TAT, REV, ENVELOPE (ENV) AND N
   O12384           VPR (VPR) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CI
   O12383           VPR (VPR) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CI
   VPX_SIVA1        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q87110           VPX PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   VPX_SIVM1        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q89552           CLONE 1A11 SEQUENCE - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV
   Q88064           (MM316O) DNA, COMPLETE CDS'S - CHIMPANZEE IMMUNODEFICIENCY V
   Q88050           (MM316X) DNA, COMPLETE CDS'S - CHIMPANZEE IMMUNODEFICIENCY V
   Q88020           (MM316ZA) DNA, COMPLETE CDS'S - CHIMPANZEE IMMUNODEFICIENCY 
   Q07393           VPX PROTEIN (X ORF PROTEIN) - CHIMPANZEE IMMUNODEFICIENCY VI
   Q04273           VPX PROTEIN (X ORF PROTEIN) - CHIMPANZEE IMMUNODEFICIENCY VI
   Q85604           X (AA 1-112) - HUMAN T-CELL LYMPHOTROPIC VIRUS TYPE 1, AND S
   VPX_SIVML        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   VPX_SIVMK        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q88057           (MM316K) DNA, COMPLETE CDS'S - CHIMPANZEE IMMUNODEFICIENCY V
   VPX_HV2G1        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   Q88068           (MM316Q) DNA, COMPLETE CDS'S - CHIMPANZEE IMMUNODEFICIENCY V
   VPX_SIVAG        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   VPX_HV2D1        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   Q89721           EHO, COMPLETE GENOME - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
   Q87481           D30 VPR (VPR) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ))
   VPX_HV2BE        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   P88144           VPX PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
   VPX_SIVAT        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q88058           (MM316L) DNA, COMPLETE CDS'S - CHIMPANZEE IMMUNODEFICIENCY V
   Q87483           D42 VPR (VPR) - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ))
   VPX_SIVAI        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   VPX_HV2ST        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   VPX_HV2CA        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   VPX_SIVS4        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q88145           VPX PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   VPX_HV2KR        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   O90319           VPX - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
   VPX_HV2SB        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   P89156           STRAIN SIVSME543, COMPLETE GENOME - CHIMPANZEE IMMUNODEFICIE
   Q76623           VPX PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
   VPX_HV2RO        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   Q89827           VPX PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   O90275           VIRAL PROTEIN R - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ
   VPX_HV2D2        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   Q76636           VPX PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 2.
   Q88137           VPX PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   VPX_SIVSP        VPX PROTEIN (X ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
   Q88125           VPX PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   Q88131           VPX PROTEIN - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (
   VPR_SIVGB        VPR PROTEIN (R ORF PROTEIN) - SIMIAN IMMUNODEFICIENCY VIRUS 
 
   O36214           VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   O90175           TRUNCATED VPR PROTEIN - HUMAN IMMUNODEFICIENCY VIRUS TYPE 1.
   Q87624           GAG - CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV).
   VPX_HV2NZ        VPX PROTEIN (X ORF PROTEIN) (VIRAL ACCESSORY PROTEIN) - HUMA
   DYHC_PARTE       DYNEIN HEAVY CHAIN, CYTOSOLIC (DYHC) - PARAMECIUM TETRAURELI

SCAN HISTORY OWL26_3 3 150 NSINGLE SPTR37_9f 3 600 NSINGLE INITIAL MOTIF SETS HIVVPRVPX1 Length of motif = 14 Motif number = 1 VPR/VPX motif I - 1 PCODE ST INT EWTLELLEELKREA VPR_HV1A2 17 17 EWTLELLEELKNEA VPR_HV1B1 17 17 EWTLELLEELKSEA HIVNY5CG3 17 17 EWVVEVLEELKEEA VPR_SIVML 18 18 KWLRDMLQDLNQEA VPX_SIVAT 27 27 AWLERTITELNRVA VPX_HV2D2 22 22 EWLQDMLRDLNEEA VPX_SIVAI 27 27 EWLERTIEALNREA VPX_HV2BE 23 23 HIVVPRVPX2 Length of motif = 16 Motif number = 2 VPR/VPX motif II - 1 PCODE ST INT AVRHFPRPWLHSLGQY VPR_HV1A2 30 -1 AVRHFPRIWLHGLGQH VPR_HV1B1 30 -1 AVRHFPRIWLHNLGQH HIVNY5CG3 30 -1 ALKHFDPRLLTALGNH VPR_SIVML 31 -1 ARLHFGRELLFQVWNY VPX_SIVAT 40 -1 AVNHLPRELIFQVWQR VPX_HV2D2 35 -1 ARRHFGMNMLIRVWNY VPX_SIVAI 40 -1 AVNHLPRELIFQVWQR VPX_HV2BE 36 -1 HIVVPRVPX3 Length of motif = 17 Motif number = 3 VPR/VPX motif III - 1 PCODE ST INT IIRILQQLLFIHFRIGC VPR_HV1A2 60 14 IIRILQQLLFIHFQNWV VPR_HV1B1 60 14 IIRILQQLLFIHFRIGC HIVNY5CG3 60 14 LIRILQRALFMHFRGGC VPR_SIVML 61 14 YYRLVQKALFVHFRCGC VPX_SIVAT 74 18 YLLLMQKAMFVHYTKGC VPX_HV2D2 70 19 YYRIVQKSMFVHFRCGC VPX_SIVAI 74 18 YLCLMQKAIFTHFKRGC VPX_HV2BE 71 19 FINAL MOTIF SETS HIVVPRVPX1 Length of motif = 14 Motif number = 1 VPR/VPX motif I - 3 PCODE ST INT EWTLELLEELKNEA O42071 17 17 EWTLELLEELKNEA VPR_HV1BR 17 17 EWTLELLEELKNEA Q79252 17 17 EWTLELLEELKNEA Q79248 17 17 EWTLELLEELKNEA Q79245 17 17 EWTLELLEELKNEA Q79238 17 17 EWTLELLEELKNEA O71267 17 17 EWTLELLEELKNEA O71254 17 17 EWTLELLEELKNEA O73196 17 17 EWTLELLEELKNEA Q71999 17 17 EWTLELLEELKNEA Q79241 17 17 EWTLELLEELKNEA Q79243 17 17 EWTLELLEELKNEA Q79275 17 17 EWTLELLEELKNEA O71258 17 17 EWTLELLEELKNEA O91890 17 17 EWTLELLEELKNEA O36203 17 17 EWTLELLEELKNEA Q74775 17 17 EWTLELLEELKSEA Q74785 17 17 EWTLELLEELKSEA Q79251 17 17 EWTLELLEELKSEA Q74786 17 17 EWTLELLEELKNEA O36217 17 17 EWTLELLEELKSEA Q79234 17 17 EWTLELLEELKSEA Q79279 17 17 EWTLELLEELKSEA Q79672 17 17 EWTLELLEELKSEA O40218 17 17 EWTLELLEELKNEA VPR_HV1JR 17 17 EWTLELLEELKNEA Q89636 17 17 EWTLELLEELKNEA Q79788 17 17 EWTLELLEELKNEA Q72014 17 17 EWTLELLEELKNEA Q71881 17 17 EWTLELLEELKNEA O41800 17 17 EWTLELLEELKREA Q72981 17 17 EWTLELLEELKREA Q72989 17 17 EWTLELLEELKREA VPR_HV1Y2 17 17 EWTLELLEELKNEA Q79264 17 17 EWTLELLEELKSEA Q71931 17 17 EWTLELLEELKSEA Q71925 17 17 EWTLELLEELKSEA Q71911 17 17 EWTLELLEELKSEA Q71904 17 17 EWTLELLEELKSEA Q71897 17 17 EWTLELLEELKSEA O42045 17 17 EWTLELLEELKSEA O36216 17 17 EWTLELLEELKSEA O36210 17 17 EWTLELLEELKNEA Q79235 17 17 EWTLELLEELKXEA Q79271 17 17 EWTLELLEELKSEA Q79242 17 17 EWTLELLEELKSEA O41768 17 17 EWTLELLEELKSEA P87921 17 17 EWTLELLEELKNEA Q75757 17 17 EWALELLEELKNEA Q79257 17 17 EWTLELLEELKSEA Q79793 17 17 EWTLELLEELKSEA VPR_HV1N5 17 17 EWTLELLEELKTEA O71972 17 17 EWTLELLEELKSEA O42084 17 17 EWTLELLEELKSEA VPR_HV1RH 17 17 EWTLELLEELKSEA O70893 17 17 EWALELLEELKNEA Q79269 17 17 EWTLELLEELKREA VPR_HV1A2 17 17 EWTLELLEELKGEA O71967 17 17 EWTLELLEELKQEA O90092 17 17 EWTLELLEELKQEA O90100 17 17 EWTLELLEELKSEA Q79260 17 17 EWTLELLEELKNEA Q79281 17 17 EWALELLEELKNEA Q79276 17 17 EWTLELLEELKNEA Q79239 17 17 EWALELLEELKSEA VPR_HV1EL 17 17 EWTLELLEELKNEA O36202 17 17 EWTLELLEELKNEA O36205 17 17 EWTLELLEELKNEA O36206 17 17 EWALELLEELKNEA Q79273 17 17 EWTLELLEELKSEA O36213 17 17 EWALELLEELKNEA O89942 17 17 EWTLELLEELKSEA Q71918 17 17 EWTLELLEELKNEA O36215 17 17 EWTLELLEELKNEA Q79237 17 17 EWTLELLEELKREA Q72492 17 17 EWTLELLEELKHEA Q79270 17 17 EWTLELLEELKREA O70676 17 17 EWALELLEELKNEA Q79280 17 17 EWTLELLEELKNEA P88158 17 17 EWTLELLEELKSEA VPR_HV1Z2 17 17 EWALELLEELKNEA O71263 17 17 EWTLELLEELKNEA Q79253 17 17 EWTLELLEELKNEA O42058 17 17 EWTLELLEELKHEA Q74455 17 17 EWTLELLEELKHEA O72610 17 17 EWTLELLEELKQEA VPR_HV1MA 17 17 EWTLELLEELKNEA Q79244 17 17 EWTLDLLEELKNEA O70888 17 17 EWTLELLEELKQEA O90075 17 17 EWTLELLEELKTEA Q79246 17 17 EWALELLEELKNEA Q79266 17 17 EWALELLEELKNEA Q79278 17 17 EWTLELLEELKNEA O90160 17 17 EWTLELLEELKNEA Q89838 17 17 EWTLELLEELKSEA Q74809 17 17 EWALELLEELKNEA O91082 17 17 EWTLELLEELKNEA Q79277 17 17 EWTLELLEELKNEA O71273 17 17 EWTLELLEELKSEA VPR_HV1OY 17 17 EWTLELLEELKREA O12160 17 17 EWTLELLEELKSEA Q71815 17 17 EWALELLEELKSEA O71277 17 17 EWTLELLEELKNEA Q89677 17 17 EWTLELLEELKNEA Q89494 17 17 AWTLELLEELKSEA Q74837 17 17 EWTLELLEELKSEA O41785 17 17 EWTLELLEELKSEA Q79233 17 17 AWALELLEELKNEA Q79263 17 17 DWTLELLEELKNEA Q73369 17 17 EWALELLEDLKNEA Q74784 17 17 EWTLELLEDLKNEA Q79249 17 17 EWTLELLEELKNEA Q79247 17 17 QWALELLEELKNEA VPR_HV1MN 17 17 EWALELLEXLKNEA Q79256 17 17 EWTLELLEELKSKA O36218 17 17 EWTLELLEELKNEA Q71944 17 17 EWTLELLEELKNEA O42054 17 17 EWALELLEELKNEA Q79262 13 13 EWTLELLEELKNEA Q73332 17 17 EWALEILEELKNEA Q79267 17 17 AWTLELLEELKREA O92296 17 17 EWTLELLEELKNEA Q79236 17 17 EWALELLEGLKNEA O89928 17 17 EWALELLEELKNEA Q79259 17 17 EWTLELLEELKSEA O36212 17 17 EWTLELLEELKSEA O42035 17 17 EWTLELLEELKSEA O42036 17 17 EWTLELLEELKSEA O42077 17 17 DWTLELLEELKNEA O36208 17 17 EWTLELLEELKQEA O90084 17 17 EWTVELLEELKHEA O72615 17 17 EWTLELLEELKNEA P88436 17 17 EWALELLEELKNEA Q79265 17 17 EWALELLEDLKTEA Q89588 17 17 EWTLELLEELKTEA P88152 17 17 EWALELLEELKSEA Q79255 17 17 AWTLELLEELKSEA Q71938 17 17 AWTLELLEELKSEA Q74772 17 17 AWTLELLEELKSEA Q74773 17 17 EWALELLEELKNEA Q79284 17 17 EWTLELLEELKNEA O36207 17 17 EWTLELLEELKNEA Q79268 17 17 EWALELLGELKNEA Q79274 17 17 EWTLELLEALKQEA O41776 17 17 EWALELLEGLKNEA O89935 17 17 EWTLELLEELRSEA O36209 17 17 EWTLELLEELKNEA Q79282 17 17 EWALELLEDLKTEA Q74781 17 17 EWALELLEDLKTEA Q74776 17 17 EWTLELLEEIKNEA O70898 17 17 EWTLELLEELKNEA Q97061 16 16 EWTLELLEELKNEA Q79254 17 17 EWTLELLEELKNEA O91897 17 17 EWTLELLEELKSEA Q72500 17 17 EWTLELLEELKSEA Q77693 17 17 EWTLELLRKLKSEA VPR_HV1SC 17 17 EWTLELLEDLKTEA Q74780 17 17 QWALELLEELKNEA Q79258 17 17 EWTLELLEELKNEA O36204 17 17 EWTLELLEELKSEA Q74777 17 17 EWALELLEDLKTEA Q74779 17 17 EWALELLEELKAEA Q77375 17 17 EWRLELLEELKNEA Q89467 17 17 EWTLELLEELKTEA O91140 17 17 EWTLELLEELKSEA P88434 17 17 EWALELLEDLKTEA Q89493 17 17 AWALELLEELKQEA O90066 17 17 EWTLELLEELKSEA Q76577 17 17 EWALKLLEELKAEA O91148 17 17 EWTLELLEDLKQEA O90059 17 17 EWALELLEELKQEA Q75004 17 17 EWALETLEELKNEA VPR_SIVCZ 17 17 EWTLELLEELKNEA VPR_HV1B1 17 17 EWTLELLEELKNEA VPR_HV1B5 17 17 EWMLDLLEDLKHEA P89694 17 17 EWALELLEELKAEA O91136 17 17 EWALEVLEELKAEA O91152 17 17 EWTLELLEELKEEA Q79668 17 17 ERTLELLEELKSEA O36211 17 17 DWVLELLEELKQEA P89843 17 17 EWALELLEDLKTEA Q74778 17 17 EWTLELLEELKQEA O91132 17 17 EWALELLEELKEEA O91162 17 17 EWALETLEEIKAEA O91166 17 17 AWTLELLEELKAEA O91144 17 17 EWTLELLEELKAEA O91170 17 17 EWALETLEELKAEA O91180 17 17 EWVVEVLEELKEEA VPR_SIVS4 18 18 EWVVEVLEELKEEA O11785 18 18 EWVVEVLEELKEEA Q07392 18 18 EWVVEVLEELKEEA Q88017 18 18 EWVVEVLEELKEEA VPR_SIVMK 18 18 EWVVEVLEELKEEA VPR_SIVML 18 18 EWVVEVLEELKEEA Q85605 18 18 EWVVEVLEEIKEEA VPR_SIVSP 18 18 EWVVEVLEEIKEEA Q89638 18 18 EWVVEVLEEIKEEA P89157 18 18 EWVVEVLKELKEEA VPR_SIVM1 18 18 EWVVEVLEELKEEA Q04270 18 18 EWVVEVLEELKEEA O57061 18 18 EWVVEVLEEIKQEA Q88146 18 18 EWVVKVLEEVKEEA O90320 18 18 EWVIEILREIQEEA O12332 22 22 EWVVEVLEERKEEA Q87957 18 18 EWVVEVLEEXKEEA Q87966 18 18 EWVIEILREITEEA Q76624 22 22 EWIGEILEEIKQEA VPR_HV2D2 22 22 EWVIEILREIKEEA VPR_HV2SB 22 22 EWVEDVMEEIKQEA Q76637 22 22 AWVIEILREIEEEA VPR_HV2NZ 22 22 EWVIEILRDIKEEA VPR_HV2CA 22 22 DWVIETLREIKEEA VPR_HV2BE 22 22 EWIIEILREIKEEA VPR_HV2RO 22 22 QWVVDVLEEIKQEA Q74231 47 47 TWVIETLKEIKEEA VPR_HV2D1 22 22 DWVIRILGEIKEEA VPR_HV2G1 22 22 EWVIGILRELREEA VPR_HV2KR 22 22 EWVIETLREIKEAL VPR_HV2ST 22 22 EWLRDMLEDLNQEA Q88101 27 27 EWLRDMLAELNREA O12384 27 27 EWLRDMLTELNQEA O12383 27 27 EWLRDMVEEINNEA VPX_SIVA1 27 27 EWLRDMLQDLNSEA Q87110 42 42 EWLNRTVEEINREA VPX_SIVM1 23 23 EWLNRTVEEINREA Q89552 23 23 EWLNRTVEEINREA Q88064 23 23 EWLNRTVEEINREA Q88050 23 23 EWLNRTVEEINREA Q88020 23 23 EWLNRTVEEINREA Q07393 23 23 EWLNRTVEEINREA Q04273 23 23 EWLNRTVEEINREA Q85604 23 23 EWLNRTVEEINREA VPX_SIVML 23 23 EWLNRTVEEINREA VPX_SIVMK 23 23 EWLNRTVEEINREA Q88057 23 23 EWLDRTIEALNREA VPX_HV2G1 23 23 EWLNRTVEEINREA Q88068 23 23 EWLRDMLEDINQEA VPX_SIVAG 27 27 EWLDRTIEALNREA VPX_HV2D1 23 23 EWLETTLEHLNRVA Q89721 22 22 EWLRDMLQDLNQEA Q87481 42 42 EWLERTIEALNREA VPX_HV2BE 23 23 EWLDRTIEALNREA P88144 23 23 KWLRDMLQDLNQEA VPX_SIVAT 27 27 EWLNRTVEEINREA Q88058 23 23 EWLRDMLQDLNQEA Q87483 42 42 EWLQDMLRDLNEEA VPX_SIVAI 27 27 EWLDRTVEAINREA VPX_HV2ST 23 23 AWLDRTVEAINREA VPX_HV2CA 23 23 EWLNRTVEEINRAA VPX_SIVS4 23 23 EWLHRTVEDINREA Q88145 23 23 AWLERMVEAINREA VPX_HV2KR 23 23 EWLNRTVEEINRAA O90319 23 23 DWLDRTVEAINREA VPX_HV2SB 23 23 EWLNRTVEGINRAA P89156 23 23 AWLDRTVEAINREA Q76623 23 23 AWLNRTVEAINREA VPX_HV2RO 23 23 DWLHRTXEEINRAA Q89827 23 23 QWLADTMEEIKEEA O90275 26 26 AWLERTITELNRVA VPX_HV2D2 22 22 DWLERTITELNRVA Q76636 22 22 DWLDRTVEEINRAA Q88137 23 23 DWLDRTVEEINRAA VPX_SIVSP 23 23 DWLHRTVEEINRAA Q88125 23 23 DWLHRTVEEINRAA Q88131 23 23 QWLADTMEEIKEEA VPR_SIVGB 22 22 HIVVPRVPX2 Length of motif = 16 Motif number = 2 VPR/VPX motif II - 3 PCODE ST INT AVRHFPRIWLHGLGQH O42071 30 -1 AVRHFPRIWLHGLGQH VPR_HV1BR 30 -1 AVRHFPRIWLHGLGQH Q79252 30 -1 AVRHFPRIWLHGLGQH Q79248 30 -1 AVRHFPRIWLHGLGQH Q79245 30 -1 AVRHFPRIWLHGLGQH Q79238 30 -1 AVRHFPRIWLHGLGQH O71267 30 -1 AVRHFPRIWLHGLGQH O71254 30 -1 AVRHFPRIWLHSLGQH O73196 30 -1 AVRHFPRIWLHSLGQH Q71999 30 -1 AVRHFPRIWLHSLGQH Q79241 30 -1 AVRHFPRIWLHSLGQH Q79243 30 -1 AVRHFPRIWLHSLGQH Q79275 30 -1 AVRHFPRPWLHGLGQH O71258 30 -1 AVRHFPRPWLHGLGQH O91890 30 -1 AVRHFPRPWLHSLGQH O36203 30 -1 AVRHFPRPWLHSLGQH Q74775 30 -1 AVRHFPRIWLHGLGQH Q74785 30 -1 AVRHFPRIWLHGLGQH Q79251 30 -1 AVRHFPRIWLHGLGQH Q74786 30 -1 AVRHFPRVWLHGLGQH O36217 30 -1 AVRHFPRIWLHSLGQH Q79234 30 -1 AVRHFPRIWLHSLGQH Q79279 30 -1 AVRHFPRIWLHSLGQH Q79672 30 -1 AVRHFPRPWLHGLGQH O40218 30 -1 AVRHFPRIWLHSLGQY VPR_HV1JR 30 -1 AVRHFPRIWLHSLGQY Q89636 30 -1 AVRHFPRIWLHSLGQY Q79788 30 -1 AVRHFPRIWLHSLGQY Q72014 30 -1 AVRHFPRIWLHSLGQY Q71881 30 -1 AVRHFPRPWLHGLGQY O41800 30 -1 AVRHFPRPWLHGLGQH Q72981 30 -1 AVRHFPRPWLHGLGQH Q72989 30 -1 AVRHFPRPWLHGLGQH VPR_HV1Y2 30 -1 AVRHFPRPWLHSLGQY Q79264 30 -1 AVRHFPRVWLHGLGQH Q71931 30 -1 AVRHFPRVWLHGLGQH Q71925 30 -1 AVRHFPRVWLHGLGQH Q71911 30 -1 AVRHFPRVWLHGLGQH Q71904 30 -1 AVRHFPRVWLHGLGQH Q71897 30 -1 AVRHFPRVWLHGLGQH O42045 30 -1 AVRHFPRVWLHGLGQH O36216 30 -1 AVRHFPRVWLHGLGQH O36210 30 -1 AVRHFPRRWLHGLGQY Q79235 30 -1 AVRHFPRIWLHGLGQH Q79271 30 -1 AVRHFPRIWLHSLGQY Q79242 30 -1 AVRHFPRIWLHSLGQY O41768 30 -1 AVRHFPRVWLHSLGQH P87921 30 -1 AVRHFPRVWLHSLGQY Q75757 30 -1 AVRHFPRIWLHGLGQH Q79257 30 -1 AVRHFPRIWLHNLGQH Q79793 30 -1 AVRHFPRIWLHNLGQH VPR_HV1N5 30 -1 AVRHFPRPWLHSLGQH O71972 30 -1 AVRHFPRLWLHSLGQH O42084 30 -1 AVRHFPRLWLHSLGQH VPR_HV1RH 30 -1 AVRHFPRLWLHSLGQH O70893 30 -1 AVRHFPRIWLHSLGQH Q79269 30 -1 AVRHFPRPWLHSLGQY VPR_HV1A2 30 -1 AVRHFPRPWLHSLGQH O71967 30 -1 AVRHFPRPWLHGLGQY O90092 30 -1 AVRHFPRPWLHGLGQY O90100 30 -1 AVRHFPRIWLHSLGQH Q79260 30 -1 AVRHFPRIWLHSLGQH Q79281 30 -1 AVRHFPRVWLHGLGQH Q79276 30 -1 AVRHFPRLWLHDLGQH Q79239 30 -1 AVRHFPRIWLHSLGQH VPR_HV1EL 30 -1 AVRHFPRPWLHSLGQH O36202 30 -1 AVRHFPRPWLHSLGQH O36205 30 -1 AVRHFPRPWLHSLGQH O36206 30 -1 AVRHFPRVWLHSLGQH Q79273 30 -1 AVRHFPRIWLHGLGQH O36213 30 -1 AVRHFPRLWLHGLGQH O89942 30 -1 AVRHFPRVWLHGLGQH Q71918 30 -1 AVRHFPRVWLHGLGQH O36215 30 -1 AVRHFPRVWLHGLGQH Q79237 30 -1 AVRHFPRLWLHSLGQY Q72492 30 -1 AVRHFPRTWLHSLGQH Q79270 30 -1 AVRHFPRIWLHGLGQH O70676 30 -1 AVRHFPRXWLHGLGQH Q79280 30 -1 AVRHFPRPWLHGLGQY P88158 30 -1 AVRHFPRIWLHSLGQY VPR_HV1Z2 30 -1 AVRHFPRVWLHGLGQY O71263 30 -1 AVRHFPRMWLHSLGQY Q79253 30 -1 AVRHFPRPWLHGLGLH O42058 30 -1 AVRHFPRPWLHGLGQH Q74455 30 -1 AVRHFPRPWLHGLGQH O72610 30 -1 AVRHFPRIWLHSLGQH VPR_HV1MA 30 -1 AVRHFPRIWLHSLGQH Q79244 30 -1 AVRHFPRPWLHSLGQH O70888 30 -1 AVRHFPRPWLHGLGQY O90075 30 -1 AVRHFPRVWLHNLGQY Q79246 30 -1 AVRHFPRIWLHSLGQH Q79266 30 -1 AVRHFPRXWLHGLGQH Q79278 30 -1 AVRHFPRPWLHGLGQY O90160 30 -1 AVRHFPRIWLHSLGQY Q89838 30 -1 AVRHFPRIWLHSLGQH Q74809 30 -1 AVRHFPRIWLHGLGQH O91082 30 -1 AVRHFPRTWLHGLGQY Q79277 30 -1 AVRHFPRVWLHGLGQH O71273 30 -1 AVRHFPRIWLHSLEQY VPR_HV1OY 30 -1 AVRHFPRPWLHGLGQH O12160 30 -1 AVRHFPRIWLHSLGQY Q71815 30 -1 AVRHFPRVWLHGLGQH O71277 30 -1 AVKHFPRLWLHSLGQH Q89677 30 -1 AVKHFPRLWLHSLGQH Q89494 30 -1 AVRHFPRIWLHSLGQY Q74837 30 -1 AVRHFPGPWLHSLGQY O41785 30 -1 AVRHFPRGWLHNLGQH Q79233 30 -1 AVRHFPRIWLHGLGQH Q79263 30 -1 AVRHFPRIWLHSLGQH Q73369 30 -1 AVRHFPRIWLHSLGQH Q74784 30 -1 AVRHFPRVWLHNLGQH Q79249 30 -1 AARHFPRIWLHGLGQH Q79247 30 -1 AVRHFPRIWLHGLGQH VPR_HV1MN 30 -1 AVRHFPRIWLHGLGQH Q79256 30 -1 AVRHFPRVWLHGLGQH O36218 30 -1 AVRHFPRRWLHDLGQY Q71944 30 -1 AVRHFPRPWLHSLGQH O42054 30 -1 AVRHFPREWLHSLGQY Q79262 26 -1 AVRHFPRVWLHGLGQH Q73332 30 -1 AVRHFPRMWLHGLGQH Q79267 30 -1 AVRHFPRPWLHSLGQY O92296 30 -1 AVKHFPRNWLHGLGQH Q79236 30 -1 AVRHFPRPWLHGLGQH O89928 30 -1 AVRHFPRIWLHGLGQY Q79259 30 -1 AVRHFPWIWLHGLGQH O36212 30 -1 AVRHFPWIWLHGLGQH O42035 30 -1 AVRHFPWIWLHGLGQH O42036 30 -1 AVRHFPWIWLHSLGQH O42077 30 -1 AVRHFPRPWLHSLGQH O36208 30 -1 AVRHFPRPWLHGLGQY O90084 30 -1 AVRHFPRPWLHGLGQH O72615 30 -1 AVRHFPGPWLHGLGQY P88436 30 -1 AVXHFPRVWLHGLGQH Q79265 30 -1 AVRHFPRIWLHSLGQH Q89588 30 -1 AVRHFPRPWLHGLGKH P88152 30 -1 AVRHFPRIWLHSLGQY Q79255 30 -1 AVRHFPRRWLHDLGQY Q71938 30 -1 AVRHFPRIWLHGLGQY Q74772 30 -1 AVRHFPRIWLHGLGQY Q74773 30 -1 AVRHFPRTWLHGLGQH Q79284 30 -1 AVRHFPRVWLHSLGQH O36207 30 -1 AVRHFPRVWLHSLGQH Q79268 30 -1 AVRHFPRAWLHSLGQH Q79274 30 -1 AVRHFPRPWLHDLGQY O41776 30 -1 AVRHFPRPWLHGLGQH O89935 30 -1 AVRHFPRVWLHGLGQH O36209 30 -1 AVRHFPRTWLHGLGQY Q79282 30 -1 AVRHFPRIWLHSLGQY Q74781 30 -1 AVRHFPRIWLHSLGQY Q74776 30 -1 AVRHFPRVWLHQLGQH O70898 30 -1 AVRHFPRPWLQGLGQY Q97061 29 -1 AVRHFSGPWLHGLGQY Q79254 30 -1 AVRHFPWTWLHGLGQY O91897 30 -1 AVRHFPRIWLHNLGRH Q72500 30 -1 AVRHFPRPWLLALGQH Q77693 30 -1 AVRHFPRIWLHGLGQH VPR_HV1SC 30 -1 AVWHFPRIWLHSLGQY Q74780 30 -1 AVRHFPRMWLHGLGQH Q79258 30 -1 AVRHFPRVWLHSLGQH O36204 30 -1 AVKHFPRIWLHGLGRH Q74777 30 -1 AVGHFPRIWLHSLGQH Q74779 30 -1 AVRHFPRPWLHALGQY Q77375 30 -1 AVKHFPRLWLHSLGQH Q89467 30 -1 AVRHFPRPWLMSLGQY O91140 30 -1 ALRHFPGPWLHGLGQY P88434 30 -1 ADRHFPRIWLHSLGQH Q89493 30 -1 AVRHFPRPCLHGLGQY O90066 30 -1 AVRHFPRIWLHNLGLH Q76577 30 -1 AVRHFPRPWLHALGQY O91148 30 -1 AVRHFPRPWLHGLGQY O90059 30 -1 AVRHFPRPWLHNLGQY Q75004 30 -1 AVRHFPRPWLHQLGQF VPR_SIVCZ 30 -1 AVRHFPRIWLHGLGQH VPR_HV1B1 30 -1 AVRHFPRIWLHGLGQH VPR_HV1B5 30 -1 AVRHFPRPWLHGLGQH P89694 30 -1 AVRHFPKPWLQALGQY O91136 30 -1 AVRHFPRHWLQALGQY O91152 30 -1 AVRHFPRPWLQACGQY Q79668 30 -1 AVRHFPWIWLHGLGQH O36211 30 -1 AVRHFPRQWLHGLGQH P89843 30 -1 AVRHFPRIWLHSLGQY Q74778 30 -1 AVRHFPRNWLQTLGQY O91132 30 -1 AVRHFPRPWLQACGQY O91162 30 -1 AVRHFPRPWLQSLGQY O91166 30 -1 AVRHFPGHWLHSLGQY O91144 30 -1 AVRHFPRPWLQALGQY O91170 30 -1 AVRHFPQPWLQALGNY O91180 30 -1 ALKHFDPRLLTALGNY VPR_SIVS4 31 -1 ALKHFDPRLLTALGNH O11785 31 -1 ALKHFDPRLLTALGNH Q07392 31 -1 ALKHFDPRLLTALGNH Q88017 31 -1 ALKHFDPRLLTALGNH VPR_SIVMK 31 -1 ALKHFDPRLLTALGNH VPR_SIVML 31 -1 ALKHFDPRLLTTLGNH Q85605 31 -1 ALNHFDPRLLTALGNY VPR_SIVSP 31 -1 ALNHFDPRLLTALGNY Q89638 31 -1 ALKHFDPRLLTALGNY P89157 31 -1 ALKHFDPRLLTALGNH VPR_SIVM1 31 -1 ALKHFDPRLLTALGNH Q04270 31 -1 ALKHFDPRLLTALGNY O57061 31 -1 ALRHFDPRLLSALGNY Q88146 31 -1 ALKHFDPRLLTALGNY O90320 31 -1 AVKHFDRRLLTNLGRY O12332 35 -1 ALNXFDPRLLTALGNY Q87957 31 -1 ALNXFDPRLLIALGNY Q87966 31 -1 ALKHFDRSLLTALGRH Q76624 35 -1 ALKHFDPRLLTALGNF VPR_HV2D2 35 -1 ALKHFDPRLLTALGYY VPR_HV2SB 35 -1 ALRHFDPRLLTALGNF Q76637 35 -1 ALRHFDPRLLTALGRY VPR_HV2NZ 35 -1 ALKHFDPRLLTALGGH VPR_HV2CA 35 -1 ALRHFDPRLLIALGYY VPR_HV2BE 35 -1 ALKHFDPRLLIALGKY VPR_HV2RO 35 -1 ALKHFDPRLLTALGNF Q74231 60 -1 ALKHFDPCLLIALGNY VPR_HV2D1 35 -1 ALKHFDPRLLIALGNY VPR_HV2G1 35 -1 ALKHFDPRLLTTLGNY VPR_HV2KR 35 -1 ALKHFDPRLLITLGNY VPR_HV2ST 34 -2 AKLHFGRELLFQVWNY Q88101 40 -1 AQRHFGRELLFQVWNY O12384 40 -1 AQRHFGRELLFQVWNY O12383 40 -1 AKLHFGRELLYQVWNY VPX_SIVA1 40 -1 AQCHFPRNLLFRLWWN Q87110 55 -1 AVNHLPRELIFQVWQR VPX_SIVM1 36 -1 AVNHLPRELIFQVWQR Q89552 36 -1 AVNHLPRELIFQVWQR Q88064 36 -1 AVNHLPRELIFQVWQR Q88050 36 -1 AVNHLPRELIFQVWQR Q88020 36 -1 AVNHLPRELIFQVWQR Q07393 36 -1 AVNHLPRELIFQVWQR Q04273 36 -1 AVNHLPRELIFQVWQR Q85604 36 -1 AVNHLPRELIFQVWQR VPX_SIVML 36 -1 AVNHLPRELIFQVWQR VPX_SIVMK 36 -1 AVNHLPRELIFQVWQR Q88057 36 -1 AVNHLPRELIFQVWQR VPX_HV2G1 36 -1 AVNHLPRELIFQVWQR Q88068 36 -1 AKMHFGRELLFQVWNY VPX_SIVAG 40 -1 AVNHLPRELIFQVWQR VPX_HV2D1 36 -1 AVNHLPRELIFQVWQK Q89721 35 -1 AQYHFPRNLLFRLWWN Q87481 55 -1 AVNHLPRELIFQVWQR VPX_HV2BE 36 -1 AVNHLPRELIFQVWQR P88144 36 -1 ARLHFGRELLFQVWNY VPX_SIVAT 40 -1 AVNHLPRELIFQVWQR Q88058 36 -1 AQCHFPRNLLFRLWWN Q87483 55 -1 ARRHFGMNMLIRVWNY VPX_SIVAI 40 -1 AVNHLPRELIFQVWQR VPX_HV2ST 36 -1 AVNHLPRELIFQVWQR VPX_HV2CA 36 -1 AVNHLPRELIFQVWRR VPX_SIVS4 36 -1 AVNHLPRELIFQVWRR Q88145 36 -1 AVNHLPRELIFQVWQR VPX_HV2KR 36 -1 AVNHLPRELIFQVWRR O90319 36 -1 AVNHLPRELIFQVWQR VPX_HV2SB 36 -1 AVNHLPRELIFQVWQR P89156 36 -1 AVNHLPRELIFQVWQR Q76623 36 -1 AVNHLPRELIFQVWQR VPX_HV2RO 36 -1 AVNHLPRELIFQVWRR Q89827 36 -1 ARRHFPEVMLAQVSQY O90275 39 -1 AVNHLPRELIFQVWQR VPX_HV2D2 35 -1 AVNHLPRELIFQVWQR Q76636 35 -1 AVNHLPRELIFQVWRR Q88137 36 -1 AVNHLPRELIFQVWRR VPX_SIVSP 36 -1 AVNHLPRELIFQVWRR Q88125 36 -1 AVNHLPRELIFQVWRR Q88131 36 -1 ARKHFPLIILNAVSEY VPR_SIVGB 35 -1 HIVVPRVPX3 Length of motif = 17 Motif number = 3 VPR/VPX motif III - 3 PCODE ST INT IIRILQQLLFIHFRIGC O42071 60 14 IIRILQQLLFIHFRIGC VPR_HV1BR 60 14 IIRILQQLLFIHFRIGC Q79252 60 14 IIRILQQLLFIHFRIGC Q79248 60 14 IIRILQQLLFIHFRIGC Q79245 60 14 IIRILQQLLFIHFRIGC Q79238 60 14 IIRILQQLLFIHFRIGC O71267 60 14 IIRILQQLLFIHFRIGC O71254 60 14 IIRILQQLLFIHFRIGC O73196 60 14 IIRILQQLLFIHFRIGC Q71999 60 14 IIRILQQLLFIHFRIGC Q79241 60 14 IIRILQQLLFIHFRIGC Q79243 60 14 IIRILQQLLFIHFRIGC Q79275 60 14 IIRILQQLLFIHFRIGC O71258 60 14 IIRILQQLLFIHFRIGC O91890 60 14 IIRILQQLLFIHFRIGC O36203 60 14 IIRILQQLLFIHFRIGC Q74775 60 14 IIRILQQLLFIHFRIGC Q74785 60 14 IIRILQQLLFIHFRIGC Q79251 60 14 IIRILQQLLFIHFRIGC Q74786 60 14 IIRILQQLLFIHFRIGC O36217 60 14 IIRILQQLLFIHFRIGC Q79234 60 14 IIRILQQLLFIHFRIGC Q79279 60 14 IIRILQQLLFIHFRIGC Q79672 60 14 IIRILQQLLFIHFRIGC O40218 60 14 IIRILQQLLFIHFRIGC VPR_HV1JR 60 14 IIRILQQLLFIHFRIGC Q89636 60 14 IIRILQQLLFIHFRIGC Q79788 60 14 IIRILQQLLFIHFRIGC Q72014 60 14 IIRILQQLLFIHFRIGC Q71881 60 14 IIRILQQLLFIHFRIGC O41800 60 14 IIRILQQLLFIHFRIGC Q72981 60 14 IIRILQQLLFIHFRIGC Q72989 60 14 IIRILQQLLFIHFRIGC VPR_HV1Y2 60 14 IIRILQQLLFIHFRIGC Q79264 60 14 IIRILQQLLFIHFRIGC Q71931 60 14 IIRILQQLLFIHFRIGC Q71925 60 14 IIRILQQLLFIHFRIGC Q71911 60 14 IIRILQQLLFIHFRIGC Q71904 60 14 IIRILQQLLFIHFRIGC Q71897 60 14 IIRILQQLLFIHFRIGC O42045 60 14 IIRILQQLLFIHFRIGC O36216 60 14 IIRILQQLLFIHFRIGC O36210 60 14 IIRILQQLLFIHFRIGC Q79235 60 14 IIRILQQLLFIHFRIGC Q79271 60 14 IIRILQQLLFIHFRIGC Q79242 60 14 IIRILQQLLFIHFRIGC O41768 60 14 IIRILQQLLFIHFRIGC P87921 60 14 IIRILQQLLFIHFRIGC Q75757 60 14 IIRILQQLLFIHFRIGC Q79257 60 14 IIRILQQLLFIHFRIGC Q79793 60 14 IIRILQQLLFIHFRIGC VPR_HV1N5 60 14 IIRILQQLLFIHFRIGC O71972 60 14 IIRILQQLLFIHFRIGC O42084 60 14 IIRILQQLLFIHFRIGC VPR_HV1RH 60 14 IIRILQQLLFIHFRIGC O70893 60 14 IIRILQQLLFIHFRIGC Q79269 60 14 IIRILQQLLFIHFRIGC VPR_HV1A2 60 14 IIRILQQLLFIHFRIGC O71967 60 14 IIRILQQLLFIHFRIGC O90092 60 14 IIRILQQLLFIHFRIGC O90100 60 14 LIRILQQLLFIHFRIGC Q79260 60 14 IIRTLQQLLFIHFRIGC Q79281 60 14 IIRILQQLLFIHFRIGC Q79276 60 14 IIRILQQLLFIHFRIGC Q79239 60 14 IIRILQQLLFIHFRIGC VPR_HV1EL 60 14 IIRILQQLLFTHFRIGC O36202 60 14 IIRILQQLLFTHFRIGC O36205 60 14 IIRILQQLLFTHFRIGC O36206 60 14 IIRILQQLLFIHFRIGC Q79273 60 14 IIRTLQQLLFIHFRIGC O36213 60 14 IIRILQQLLFIHFRIGC O89942 60 14 LIRILQQLLFIHFRIGC Q71918 60 14 IIRILQQLLFTHFRIGC O36215 60 14 IIRTLQQLLFIHFRIGC Q79237 60 14 IIRILQQLLFIHFRIGC Q72492 60 14 IIRILQQLLFIHFRIGC Q79270 60 14 IIRTLQQLLFIHFRIGC O70676 60 14 IIRILQQLLFIHFRIGC Q79280 60 14 IIRILQQLLFVHFRIGC P88158 60 14 LIRILQQLLFIHFRIGC VPR_HV1Z2 60 14 IIRILQQLLFIHFRIGC O71263 60 14 LIRILQQLLFIHFRIGC Q79253 60 14 IIRILQQLLFIHFRIGC O42058 60 14 IIRILQQLLFVHFRIGC Q74455 60 14 IIRILQQLLFVHFRIGC O72610 60 14 IIRSLQQLLFIHFRIGC VPR_HV1MA 60 14 LIRTLQQLLFIHFRIGC Q79244 60 14 IIRILQQLLFIHFRIGC O70888 60 14 IIRLLQQLLFIHFRIGC O90075 60 14 IIRILQQLLFIHFRIGC Q79246 60 14 IIRMLQQLLFIHFRIGC Q79266 60 14 LIRILQQLLFIHFRIGC Q79278 60 14 IIRILQQLLLIHFRIGC O90160 60 14 IIRILQQLLFIHFRIGR Q89838 60 14 LIRMLQQLLFIHFRIGC Q74809 60 14 IIRILQQLLFIHYRIGC O91082 60 14 IVRILQQLLFIHFRIGC Q79277 60 14 MIRTLQQLLFIHFRIGC O71273 60 14 IIRILQQLLFIHFRIGC VPR_HV1OY 60 14 IIRILQRLLFVHFRIGC O12160 60 14 LIRTLQQLLFIHFRIGC Q71815 60 14 IIRTLQQLLFIHFRIGC O71277 60 14 LIRILQQLLFIHFRIGC Q89677 60 14 LIRILQQLLFIHFRIGC Q89494 60 14 IIRILQQLLFIHFRIGC Q74837 60 14 IIRILQQLLFIHFRIGC O41785 60 14 IIRSLQQLLFIHFRIGC Q79233 60 14 IIRILQQLLFIHFRIGC Q79263 60 14 LIRILQQLLFIHFRIGC Q73369 60 14 IIRILQQLLFIHFRIGC Q74784 60 14 IIRILQQLLFIHFRIGC Q79249 60 14 IIRTLQQLLFIHFRIGC Q79247 60 14 IIRILQQLLFIHFRIGC VPR_HV1MN 60 14 IIRILQQLLFIHFRIGC Q79256 60 14 IIRILQQLLFIHFRIGC O36218 60 14 ITRILQQLLFIHFRIGC Q71944 60 14 IIRIPQQLLFTHFRIGC O42054 60 14 IIRILQQMLFIHFRIGC Q79262 56 14 ITRTLQQLLFIHFRIGC Q73332 60 14 IIRILQQLLFIHFRIGC Q79267 60 14 IIRILQQLLFIHFRIGC O92296 60 14 IIRMLQQLLFIHFRIGC Q79236 60 14 IIRILQQLLFIHFRIGC O89928 60 14 LIRTLQQLLFIHFRIGC Q79259 60 14 IIRTLQQLLFIHFRIGC O36212 60 14 IIRTLQQLLFIHFRIGC O42035 60 14 IIRTLQQLLFIHFRIGC O42036 60 14 IIRTLQQLLFIHFRIGC O42077 60 14 IIRILQQLLFTHFRIGC O36208 60 14 MIRMLQQLLFIHFRIGC O90084 60 14 IIRILQQLLFVHFRIGC O72615 60 14 IIRVLQQLLFIHFRIGC P88436 60 14 LIRILQQLLFIHFRIGC Q79265 60 14 IIRILQQLLFIHFRIGC Q89588 60 14 IIRILQQLLFVHFRIGC P88152 60 14 LIRMLQQLLFIHFRIGC Q79255 60 14 IIRILQQLLFIHFRIGC Q71938 60 14 IIRTLQQLLFIHFRIGC Q74772 60 14 IIRTLQQLLFIHFRIGC Q74773 60 14 IIRMLQQLLFTHFRIGC Q79284 60 14 LLRSLQQLLFIHFRIGC O36207 60 14 LIRSLQQLLFIHFRVGC Q79268 60 14 IIRILQQLLFIHFRIGC Q79274 60 14 IIRILQQLLFIHFRIGC O41776 60 14 LIRILQQLLFIHFRIGC O89935 60 14 IIRILQQPLFIHFRIGC O36209 60 14 LIRMLQQLLFTHFRIGC Q79282 60 14 IIRILQQLLFIHFRIGC Q74781 60 14 IIRILQQLLFIHFRIGC Q74776 60 14 LIRTLQQLLFIHFRIGC O70898 60 14 IIRMLQQLLFVHFRIGC Q97061 59 14 IIRILQQLLFIHFRIGC Q79254 60 14 IIRILQQLLFIHYRIGC O91897 60 14 IIRILQQLPFIHFRIGC Q72500 60 14 LIRSLQQLLFIHFRIGC Q77693 60 14 IIRILQQLLFIHFRIGC VPR_HV1SC 60 14 IIRILQQLLFIHFRIGC Q74780 60 14 IIRILQQLLFIHFRMGC Q79258 60 14 LLRNLQQLLFTHFRIGC O36204 60 14 IIRILQQLLFIHFRIRC Q74777 60 14 IIRILQQLLFIHFRIGC Q74779 60 14 IIRILQQLLFTHYRIGC Q77375 60 14 LIRMLQQLLFIHFRIGC Q89467 60 14 IIRILQLLLFAHFRIGC O91140 60 14 IIRVLQQLLFIHFRIGC P88434 60 14 IIRILQQLLFIHFRIGC Q89493 60 14 IIRILQQLLFIHFRIGC O90066 60 14 IIRILLLLLFIHFRIGC Q76577 60 14 IIRILQQLLFIHYRIGC O91148 60 14 LIRMLQQLLFTHFRIGC O90059 60 14 LIRTLQQLMFIHFRIGC Q75004 60 14 IIRILQHLLFIHFRLGC VPR_SIVCZ 60 14 IIRILQQLLFIHFQNWV VPR_HV1B1 60 14 IIRILQQLLFIHFQNWV VPR_HV1B5 60 14 IIRILQQLLFVHFRIGC P89694 60 14 IIRILQQLLFAHFRIGC O91136 60 14 IIRILQQLLFAHFRIGC O91152 60 14 IIRILQQLLFTHYRIGC Q79668 60 14 IIRTLQQLLSIHFRIGC O36211 60 14 FIRTLQQLLFVHFRIGC P89843 60 14 IIRILQQLQLIHFRIGC Q74778 60 14 IIRILQQILFTHYRIGC O91132 60 14 IIRILQQLMFIHYRIGC O91162 60 14 IIRILQQLIFAHFRIGC O91166 60 14 IIRILQLILFAHFRIGC O91144 60 14 IIRLLQLMIFAHFRIGC O91170 60 14 IIRILQQLLFTHFRIGC O91180 60 14 LIRILQRALFIHFRSGC VPR_SIVS4 61 14 LIRILQRALFMHFRGGC O11785 61 14 LIRILQRALFMHFRGGC Q07392 61 14 LIRILQRALFMHFRGGC Q88017 61 14 LIRILQRALFMHFRGGC VPR_SIVMK 61 14 LIRILQRALFMHFRGGC VPR_SIVML 61 14 LIRILQRALFMHFRGGC Q85605 61 14 LIRILQRALFIHFRGGC VPR_SIVSP 61 14 LIRILQRALFIHFRGGC Q89638 61 14 LIRILQRALFIHFRSGC P89157 61 14 LIRILQRALFIHFRSGC VPR_SIVM1 61 14 LIKILQRALFMHFRGGC Q04270 61 14 LIKILQRALFMHFRGGC O57061 61 14 LIKILQRALFMHFRGGC Q88146 61 14 LIRILQRALFIHFRGGC O90320 61 14 LIRILQRALFTHFRAGC O12332 65 14 LIRILQRALFIHFRGGC Q87957 61 14 LIRILQGALFIHFRGGC Q87966 61 14 LIRILQRALFTHFRAGC Q76624 65 14 LIKILQRALFLHFRAGC VPR_HV2D2 65 14 LIRVLQRALFTHFRAGC VPR_HV2SB 65 14 LIKILQRALFLHFRAGC Q76637 65 14 LIRILQRALFAHFRAGC VPR_HV2NZ 65 14 LIRVLQRALFTHFRAGC VPR_HV2CA 65 14 LIKTLQRALFVHFRAGC VPR_HV2BE 65 14 LIKVLQRALFTHFRAGC VPR_HV2RO 65 14 LIKLLQRALFLHFRGGC Q74231 90 14 LIRVLQRALFVHIRAGC VPR_HV2D1 65 14 LIRILQRALFVHLRAGC VPR_HV2G1 65 14 LINVLQRALFVHFRAGC VPR_HV2KR 65 14 LIRILQRALLLHFRAGC VPR_HV2ST 64 14 YYRLVQKALFVHFRCGC Q88101 74 18 YYRLVQKALFVHIRCGC O12384 74 18 YYKLVQRALFVHFRCGC O12383 74 18 YYRLVQKALFVHFRCGC VPX_SIVA1 74 18 YCRILQKALFVHMKGRC Q87110 90 19 YLCLIQKALFMHCKKGC VPX_SIVM1 71 19 YLCLIQKALFMHCKKGC Q89552 71 19 YLCLIQKALFMHCKKGC Q88064 71 19 YLCLIQKALFMHCKKGC Q88050 71 19 YLCLIQKALFMHCKKGC Q88020 71 19 YLCLIQKALFMHCKKGC Q07393 71 19 YLCLIQKALFMHCKKGC Q04273 71 19 YLCLMQKALFMHCKKGC Q85604 71 19 YLCLMQKALFMHCKKGC VPX_SIVML 71 19 YLCLMQKALFMHCKKGC VPX_SIVMK 71 19 YLCLIQKALFTHCKKGC Q88057 71 19 YLCLMQKAVFIHFKRGC VPX_HV2G1 71 19 YLCLIQKALFVHCKEGC Q88068 71 19 YYKLVQKALFVHFRCGC VPX_SIVAG 74 18 YLCIMQKAVYIHFKKGC VPX_HV2D1 71 19 YLCLMQKAMFIHFAKGC Q89721 70 19 YYRVLQKALFVHMKGRC Q87481 90 19 YLCLMQKAIFTHFKRGC VPX_HV2BE 71 19 YLCLMQKAMFIHLKKGC P88144 71 19 YYRLVQKALFVHFRCGC VPX_SIVAT 74 18 YLCLIQKASFMHCKKGC Q88058 71 19 YYRILQKALYVHMKGRC Q87483 90 19 YYRIVQKSMFVHFRCGC VPX_SIVAI 74 18 YLCLMQKAMFIHSKRGC VPX_HV2ST 71 19 YLCLMQKAVFIHFKRGC VPX_HV2CA 71 19 YLCLIQKALFVHCKKGC VPX_SIVS4 71 19 YLCLIQKALFMHSKRGC Q88145 71 19 YLRLMQYAMFIHVKKGC VPX_HV2KR 71 19 YLCLIQKALFVHCKRGC O90319 71 19 YLCLMQKAVFMHFKKGC VPX_HV2SB 71 19 YLILIQKALFMHCKKGC P89156 71 19 YLCLMQKAMYIHGRKGC Q76623 71 19 YLCIIQKAVYMHVRKGC VPX_HV2RO 71 19 YLCLIQKALFMHCKKGC Q89827 71 19 FITLVNRALFLHLPTCP O90275 69 14 YLLLMQKAMFVHYTKGC VPX_HV2D2 70 19 YLLLMQKAMFVHYTKGC Q76636 70 19 YLCLIQKAMFMHCKKGC Q88137 71 19 YLCLIQKAMFMHCKKGC VPX_SIVSP 71 19 YLCLIQKAMFMHCKKGC Q88125 71 19 YLCSIQKAMFMHCKKGC Q88131 71 19 FITLMNRAIWVHLAQGC VPR_SIVGB 65 14

User query: Display/Full Code "HIVVPRVPX"