WORKLIST ENTRIES (1):

GEMCOATAL2 View alignment       Geminivirus AL2 coat protein signature
 Type of fingerprint: COMPOUND with 4  elements
Links:
   PRINTS; PR00224 GEMCOATAR1; PR00225 GEMCOATBR1; PR00226 GEMCOATMSV
   PRINTS; PR00223 GEMCOATARBR1; PR00227 GEMCOATAL1; PR00228 GEMCOATCLVL1
   PRINTS; PR00229 GEMCOATMSVL1; PR00231 GEMCOATAL3; PR00221 CAULIMOCOAT
   PRINTS; PR00222 CUCUMOCOAT; PR00232 POTXCARLCOAT
   INTERPRO; IPR000942

 Creation date 08-JUL-1994; UPDATE 07-JUN-1999

   1. STANLEY, J., MARKHAM, P.G., CALLIS, R.J. AND PINNER, M.S.
   The nucleotide sequence of an infectious clone of the geminivirus
   beet curly top virus.
   EMBO J. 5(8) 1761-1767 (1986).

   2. MULLINEAUX, P. M., DONSON, J., MORRIS-KRSINICH, B.A., BOULTON, M. I.
   AND DAVIE, J. W. 
   The nucleotide sequence of maize streak virus DNA.
   EMBO J. 3 3063-3068 (1984). 

   3. LAZAROWITZ, S.G.
   Infectivity and complete nucleotide sequence of the genome of a South 
   African isolate of maize streak virus.
   NUCLEIC ACIDS RES. 16 229-249 (1988).

   4. LAZAROWITZ, S.G. AND LAZDINS, I.B.
   Infectivity and complete nucleotide sequence of the cloned genomic
   components of a bipartite squash leaf curl geminivirus with a broad
   host range phenotype.
   VIROLOGY 180 58-69 (1991).

   5. KHEYR-POUR, A., BENDAHMANE, M., MATZEIT, V., ACCOTTO, G.P.,
   CRESPI, S. AND GRONENBORN, B.
   Tomato yellow leaf curl virus from Sardinia is a whitefly-transmitted
   monopartite geminivirus.
   NUCLEIC ACIDS RES. 19 6763-6769 (1991).
  
   6. NAVOT, N., PICHERSKY, E., ZEIDAN, M., ZAMIR, D. AND CZOSNEK, H.
   Tomato yellow leaf curl virus: a whitefly-transmitted geminivirus with
   a single genomic component.
   VIROLOGY 185 151-161 (1991).

   7. COUTTS, R.H., COFFIN, R.S., ROBERTS, E.J. AND HAMILTON, W.D.
   The nucleotide sequence of the infectious cloned DNA components of
   potato yellow mosaic virus.
   J.GEN.VIROL. 72(7) 1515-1520 (1991).

   Geminiviruses are characterised by a genome of circular single-stranded
   DNA encapsidated in twinned (geminate) quasi-isometric particles, from
   which the group derives its name [1]. Most geminiviruses can be divided
   into 2 subgroups on the basis of host range and/or insect vector: i.e.
   those that infect dicotyledenous plants and are transmitted by the same
   whitefly species, and those that infect monocotyledenous plants and are
   transmitted by different leafhopper vectors. The genomes of the whitefly-
   transmitted cassava latent (CLV), tomato golden mosaic (TGMV) and bean
   golden mosaic (BGMV) viruses possess a bipartite genome. By contrast, only
   a single DNA component has been identified for the leafhopper-transmitted 
   maize streak (MSV) and wheat dwarf (WDV) viruses [2,3]. Beet curly top
   (BCTV), bean summer death and tobacco yellow dwarf viruses belong to a 
   third possible subgroup. Like MSV and WDV, BCTV is transmitted by a 
   specific leafhopper species, yet like the whitefly-transmitted gemini- 
   viruses it has a host range confined to dicotyledenous plants.
  
   Sequence comparison of the whitefly-transmitted squash leaf curl [4]
   and tomato yellow leaf curl viruses [5,6] with the genomic components of
   TGMV and BGMV reveals a close evolutionary relationship [4]. Amino acid
   sequence alignments of potato yellow mosaic viral (PYMV) proteins with 
   those encoded by other geminiviruses show that PYMV is closely related 
   to geminiviruses isolated from the New World, especially in the putative 
   coat protein gene regions [7].
   
   GEMCOATAL2 is a 4-element fingerprint that provides a signature for the
   geminivirus AL2 coat proteins. The fingerprint was derived from an initial
   alignment of 5 sequences: the motifs were drawn from conserved regions
   spanning the full alignment length. Two iterations on OWL23.1 were
   required to reach convergence, at which point a true set comprising
   19 sequences was identified. 
  
   An update on SPTR37_9f identified a true set of 51 sequences, and 2
   partial matches.

  SUMMARY INFORMATION
     51 codes involving  4 elements
      1 codes involving  3 elements
      1 codes involving  2 elements

   COMPOSITE FINGERPRINT INDEX
  
    4|  51   51   51   51  
    3|   1    1    1    0  
    2|   1    1    0    0  
   --+---------------------
     |   1    2    3    4  

True positives..
 O72720         O72724         O72706         Q67561         
 Q98742         Q88558         O72715         O38543         
 VAL2_TYLCV     O56991         O71204         P89130         
 O71962         VAL2_PYMVV     O72708         O73501         
 Q88943         O72716         O72711         Q96611         
 O73495         VAL2_ABMVW     O41337         O36623         
 VAL2_TGMV      VAL2_TMOV      O91198         O56817         
 Q01732         VAL2_SLCV      P89125         Q67582         
 VAL2_BGMV      Q67589         Q67577         Q96703         
 Q88950         Q67619         VAL2_TYLCU     VAL2_TYLCM     
 VAL2_CLVN      O91273         Q88884         VAL2_PHUV      
 VAL2_ICMV      VAL2_CLVK      Q88538         Q88548         
 Q65320         VAL2_TYLCA     O12279         
Subfamily:  Codes involving 3 elements
 Subfamily True positives..
 O91596         
Subfamily:  Codes involving 2 elements
 Subfamily True positives..
 O55378         


  PROTEIN TITLES
   O72720           AC2 PROTEIN - COTTON LEAF CURL VIRUS.
   O72724           AC2 PROTEIN - COTTON LEAF CURL VIRUS.
   O72706           AC2 PROTEIN - COTTON LEAF CURL VIRUS.
   Q67561           PUTATIVE TRANSCRIPTIONAL ELEMENT - BEAN DWARF MOSAIC VIRUS.
   Q98742           HYPOTHETICAL 15.2 KD PROTEIN - TOMATO YELLOW LEAF CURL VIRUS
   Q88558           V1, V2, C1, C2, C3 AND C4 GENES - TOMATO YELLOW LEAF CURL VI
   O72715           AC2 PROTEIN - COTTON LEAF CURL VIRUS.
   O38543           DOMINICAN REPUBLIC ISOLATE, INFECTIOUS CLONE, COMPLETE GENOM
   VAL2_TYLCV       AL2 PROTEIN (C2 PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (TY
   O56991           REPLICASE-ASSOCIATED - PAPAYA LEAF CURL VIRUS.
   O71204           TRANSCRIPTIONAL ACTIVATOR - POTATO YELLOW MOSAIC VIRUS.
   P89130           AC2 PROTEIN - SIDA GOLDEN MOSAIC VIRUS.
   O71962           TRANSACTIVATOR PROTEIN - SIDA GOLDEN MOSAIC VIRUS.
   VAL2_PYMVV       AL2 PROTEIN - POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA)
   O72708           AC2 PROTEIN - COTTON LEAF CURL VIRUS.
   O73501           AC2 PROTEIN - OKRA YELLOW VEIN MOSAIC VIRUS.
   Q88943           ORF C2 - TOMATO YELLOW LEAF CURL VIRUS (TYLCV).
   O72716           AC2 PROTEIN - COTTON LEAF CURL VIRUS.
   O72711           AC2 PROTEIN - COTTON LEAF CURL VIRUS.
   Q96611           AV1, AC3, AC2, AC1, AND AC4 GENES, COMPLETE CDS - ABUTILON M
   O73495           AC2 PROTEIN - OKRA YELLOW VEIN MOSAIC VIRUS.
   VAL2_ABMVW       AL2 PROTEIN - ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA).
   O41337           HYPOTHETICAL 14.7 KD PROTEIN - TOMATO LEAF CURL GEMINIVIRUS.
   O36623           TRANSACTIVATOR PROTEIN - TAINO TOMATO MOTTLE VIRUS.
   VAL2_TGMV        AL2 PROTEIN - TOMATO GOLDEN MOSAIC VIRUS (TGMV).
   VAL2_TMOV        AL2 PROTEIN - TOMATO MOTTLE VIRUS (ISOLATE FLORIDA) (TMOV).
   O91198           AC2 PROTEIN - HAVANA TOMATO VIRUS.
   O56817           C2 PROTEIN - CHAYOTE MOSAIC VIRUS.
   Q01732           AL2 PROTEIN (19.5 KD PROTEIN) - BEAN GOLDEN MOSAIC VIRUS.
   VAL2_SLCV        AL2 PROTEIN - SQUASH LEAF CURL VIRUS.
   P89125           AC2 PROTEIN - SIDA GOLDEN MOSAIC VIRUS.
   Q67582           (BGMV), DNA B, COMPLETE GENOME - BEAN GOLDEN MOSAIC VIRUS.
   VAL2_BGMV        AL2 PROTEIN (19.6 KD PROTEIN) - BEAN GOLDEN MOSAIC VIRUS.
   Q67589           BEAN GOLDEN MOSAIC GEMINIVIRUS TYPE II COAT PROTEIN (AR1) GE
   Q67577           BEAN GOLDEN MOSAIC GEMINIVIRUS VIRAL COAT PROTEIN (AR1) - BE
   Q96703           TRANSACTIVATOR PROTEIN - CABBAGE LEAF CURL VIRUS.
   Q88950           (SICILY) GENES FOR V1, V2, C1, C2, C3, C4 - TOMATO YELLOW LE
   Q67619           (V1-V2, C1-C4) GENES, COMPLETE CDS - TOMATO YELLOW LEAF CURL
   VAL2_TYLCU       AL2 PROTEIN (C2 PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (ST
   VAL2_TYLCM       AL2 PROTEIN (C2 PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (ST
   VAL2_CLVN        AL2 PROTEIN (15.2 KD PROTEIN) - CASSAVA LATENT VIRUS (STRAIN
   O91273           REP PROTEIN 2 - TOMATO LEAF CURL GEMINIVIRUS.
   Q88884           TRAP - TEXAS PEPPER VIRUS.
   VAL2_PHUV        AL2 PROTEIN - PEPPER HUASTECO VIRUS (PHV).
   VAL2_ICMV        AL2 PROTEIN - INDIAN CASSAVA MOSAIC VIRUS (ICMV).
   VAL2_CLVK        AL2 PROTEIN (15.2 KD PROTEIN) - CASSAVA LATENT VIRUS (STRAIN
   Q88538           COAT PROTEIN AV1, AV2, AV3, REPLICATION-ASSOCIATED PROTEIN A
   Q88548           COAT PROTEIN AV1, AV2, AV3, REPLICATION-ASSOCIATED PROTEIN A
   Q65320           V1, V2, C1, C2, C3, C4 ,C5 GENES - AGERATUM YELLOW VEIN VIRU
   VAL2_TYLCA       AL2 PROTEIN (C2 PROTEIN) - TOMATO YELLOW LEAF CURL VIRUS (ST
   O12279           TRAP PROTEIN - TOMATO LEAF CURL GEMINIVIRUS.
 
   O91596           AC2 PROTEIN - MUNGBEAN YELLOW MOSAIC VIRUS.
 
   O55378           TRANSCRIPTION ACTIVATION PROTEIN - COWPEA GOLDEN MOSAIC GEMI

SCAN HISTORY OWL23_1 2 100 NSINGLE OWL28_0 2 100 NSINGLE SPTR37_9f 2 53 NSINGLE INITIAL MOTIF SETS GEMCOATAL21 Length of motif = 19 Motif number = 1 Geminivirus AL2 motif I - 1 PCODE ST INT RRRRIDLDCGCSIYIHINC VAL2_SLCV 25 25 RRRRIDLNCGCSIYIHIDC VAL2_TGMV 25 25 RRRRIDLDCGCSIYFHIDC VAL2_PYMVV 25 25 RRRRVDLDCGCSYYIHLDC VAL2_TYLCM 29 29 RRRRIDLNCGCSIFYHIKC VAL2_BGMV 68 68 GEMCOATAL22 Length of motif = 20 Motif number = 2 Geminivirus AL2 motif II - 1 PCODE ST INT GFTHMGRHHCASGREFRFYL VAL2_SLCV 49 5 GFTHRGTYHCASSREWRLYL VAL2_TGMV 47 3 GFTHRGAHHCTSGREWRVYL VAL2_PYMVV 47 3 GFTHRGVHHCASSNEWRLYL VAL2_TYLCM 51 3 GFTHRGEHHCASGREFRFYL VAL2_BGMV 90 3 GEMCOATAL23 Length of motif = 13 Motif number = 3 Geminivirus AL2 motif III - 1 PCODE ST INT LGGSKSPLFQDVQ VAL2_SLCV 68 -1 LGDNKSPLFQDNQ VAL2_TGMV 66 -1 LGDRKSPLFQDKP VAL2_PYMVV 66 -1 LRDNKSPIFHDNQ VAL2_TYLCM 70 -1 LGGTKSPLFQDHA VAL2_BGMV 109 -1 GEMCOATAL24 Length of motif = 15 Motif number = 4 Geminivirus AL2 motif IV - 1 PCODE ST INT LPSLDGIDSSFWDDI VAL2_SLCV 115 34 LPSMDDIDDSFWENL VAL2_TGMV 113 34 LPSLDDIDDSFWVEL VAL2_PYMVV 113 34 LPHLDDLTVSDWSFF VAL2_TYLCM 118 35 LPSLDDIDSSFWDDI VAL2_BGMV 156 34 FINAL MOTIF SETS GEMCOATAL21 Length of motif = 19 Motif number = 1 Geminivirus AL2 motif I - 2 PCODE ST INT RRRRVDLECGCSYYLSINC O72720 28 28 RRRRVDLECGCSYYLSINC O72724 28 28 RRRRVDLECGCSYYLSINC O72706 28 28 RRRRIDLECGCSIYIHIGC Q67561 25 25 RRRRVDLPCGCSYFIALAC Q98742 28 28 RRRRVDLACGCSYFISLAC Q88558 28 28 RRRRVDLECGCSYYLSINC O72715 28 28 RRKRVDLDCGCSYYLHLNC O38543 29 29 RRKRVDLDCGCSYYLHLNC VAL2_TYLCV 29 29 RRRRVDLPCGCSYFIALAC O56991 28 28 RRRRIDLDCGCSIYFHIDC O71204 25 25 RRRRIDLECGCSIYFHIGC P89130 25 25 RRRRIDLNCGCSIYFHIGC O71962 25 25 RRRRIDLDCGCSIYFHIDC VAL2_PYMVV 25 25 RRRRVDLPCGCSYFIALAC O72708 28 28 RRKRVDLECGCSYYLSINC O73501 28 28 RRKRVDLDCGCSYYLHLNC Q88943 29 29 RRRRVDLECGCSYYLSINC O72716 28 28 RRRRVDLPCGCSYFIALAC O72711 28 28 RRRRIDLQCGCSIYFHIDC Q96611 25 25 RRRRVDLECGCFYYLSINC O73495 28 28 RRRRIDLQCGCSIYFHIDC VAL2_ABMVW 25 25 RRRRIDLDCGCSIYFHIDC O41337 25 25 RRRRVDLQCGCSIYFHLNC O36623 25 25 RRRRIDLNCGCSIYIHIDC VAL2_TGMV 25 25 RRRRVDLQCGCSIYFHLGC VAL2_TMOV 25 25 RRRRIDLECGCSIYFHIDC O91198 25 25 RRKRIDLECGCSFYLHIDC O56817 29 29 RRRRIDLNCGCSIFYHIKC Q01732 68 68 RRRRIDLDCGCSIYIHINC VAL2_SLCV 25 25 RRRRIDLECGCSIYFHIGC P89125 25 25 RRRRIDLNCGCSIFYHIKC Q67582 68 68 RRRRIDLNCGCSIFYHIKC VAL2_BGMV 68 68 RRRRIDLNCGCSIFYHIKC Q67589 68 68 RRRRVDLECGCTIYVHINC Q67577 25 25 RRRRIDLNCGCSIFLHINC Q96703 25 25 RRRRVDLDCGCSYYIHLDC Q88950 29 29 RRRRVDLDCGCSYYIHLDC Q67619 29 29 RRRRVDLDCGCSYYIHLDC VAL2_TYLCU 29 29 RRRRVDLDCGCSYYIHLDC VAL2_TYLCM 29 29 RRRRVDLVCGCSYYLHINC VAL2_CLVN 29 29 RRRRVDLPCGCSYYVSINC O91273 28 28 RRRRIDLNCGCSIFLHINC Q88884 25 25 RRRRIDLACGCSIYIHINC VAL2_PHUV 34 34 RRKRVDLNCGCSYYVHINC VAL2_ICMV 29 29 RRRRVDLVCGCSYYLHINC VAL2_CLVK 29 29 RRRRVDLPCGCSYYISINC Q88538 28 28 LRRRVDLPCGCTYYISINC Q88548 28 28 RRRRVDLTCGCSYYFGIDC Q65320 29 29 RRKRIDLPCGCSYYLHINC VAL2_TYLCA 29 29 RRRRVDLPCGCSYYLGINC O12279 29 29 GEMCOATAL22 Length of motif = 20 Motif number = 2 Geminivirus AL2 motif II - 2 PCODE ST INT GFTHRGTHHCSSSREWRIYL O72720 50 3 GFTHRGTHHCSSSREWRIYL O72724 50 3 GFTHRGTHHCSSSREWRIYL O72706 50 3 GFTHRGAHHCTSSREWRVYL Q67561 47 3 GFTHRGTHHCSSSREWRVYL Q98742 50 3 GFTHRGTHHCSSNREWRVYL Q88558 50 3 GFSHRGTHHCSSFNEWRLYL O72715 50 3 GFTHRGTHHCSSGREWRFYL O38543 51 3 GFTHRGTHHCSSGREWRFYL VAL2_TYLCV 51 3 GFTHRGTHHCSSSREWRVYL O56991 50 3 GFTHRGAHHCTSGREWRVYL O71204 47 3 GFTHRGTHHCTSGREWRLYL P89130 47 3 GFTHRGIHHCTSGGEWRVYL O71962 47 3 GFTHRGAHHCTSGREWRVYL VAL2_PYMVV 47 3 GFTHRGTHHCSSSREWRVYL O72708 50 3 GFSHRGTHHCSSFNEWRLYL O73501 50 3 GFTHRGTHHCSSGREWRFYL Q88943 51 3 GFSHRGTHHCSSFNEWRLYL O72716 50 3 GFTHRGTHHCSSSREWRVYL O72711 50 3 GFTHRGTHHCTSGGEWRVYL Q96611 47 3 GFSHRGTHHCSSSKEWRLYL O73495 50 3 GFTHRGIHHCTSGGEWRVYL VAL2_ABMVW 47 3 GFTHRGAHHCTSGREWRVYL O41337 47 3 GFTHRGTHHCTSGGEWRVYL O36623 47 3 GFTHRGTYHCASSREWRLYL VAL2_TGMV 47 3 GFTHRGTHHCTSGGEWRVYL VAL2_TMOV 47 3 GFPHRGYHHCTSGREWRVYL O91198 47 3 GFAHRGTHHCASSAEFRLYL O56817 51 3 GFTHRGEHHCASGREFRFYL Q01732 90 3 GFTHMGRHHCASGREFRFYL VAL2_SLCV 49 5 GFTHRGTHHCTSGREWRLYL P89125 47 3 GFTHRGEHHCASGREFRFYL Q67582 90 3 GFTHRGEHHCASGREFRFYL VAL2_BGMV 90 3 GFTHRGEHHCASGREFRFYL Q67589 90 3 GFTHRGTHHCTSSGEWRVYL Q67577 47 3 GFTHRGEHHCSSGREFRFYL Q96703 47 3 GFTHRGVHHCASSNEWRLYL Q88950 51 3 GFTHRGVHHCASSNEWRLYL Q67619 51 3 GFTHRGVHHCASSNEWRLYL VAL2_TYLCU 51 3 GFTHRGVHHCASSNEWRLYL VAL2_TYLCM 51 3 GFTHRGTHHCSSSNEWRVYL VAL2_CLVN 51 3 GFTHRGIHHCGSSREWRIYL O91273 50 3 GFTHRGEHHCASGREFRFYL Q88884 47 3 GFTHRGTHHCSSSSEWRFYL VAL2_PHUV 56 3 GFTHRGTHHCSSGDEWRLYL VAL2_ICMV 51 3 GFTHRGSHHCSSSNEWRVYL VAL2_CLVK 51 3 GFTHRGIHHCGSSREWRIYL Q88538 50 3 GFTHRGVHHCGSSREWRIYL Q88548 50 3 GFSHRGITHCNSMREWRIYL Q65320 51 3 GFTHRGTHHCSSSDEWRVYL VAL2_TYLCA 51 3 GFSHRGTHHCSSSREWRVYL O12279 51 3 GEMCOATAL23 Length of motif = 13 Motif number = 3 Geminivirus AL2 motif III - 2 PCODE ST INT LGGSKSPLFQDHQ O72720 69 -1 LGGSKSPLFQDHQ O72724 69 -1 LGGSKSPLFQDHQ O72706 69 -1 LGDRKSPLFQDIQ Q67561 66 -1 LGDSKSPIFQDNR Q98742 69 -1 LGNSKSPLFQDNR Q88558 69 -1 LGGSKSPLFQNPQ O72715 69 -1 LGDKQSPLFQDNR O38543 70 -1 LGDKQSPLFQDNR VAL2_TYLCV 70 -1 LGDSKSPVFQDNR O56991 69 -1 LGDRKSPLFQDKP O71204 66 -1 LGDRKSPLFQDVP P89130 66 -1 LGDRKSPLFQDIQ O71962 66 -1 LGDRKSPLFQDKP VAL2_PYMVV 66 -1 LGDSKSPVFQDNR O72708 69 -1 LGGSKSPLFQNPQ O73501 69 -1 LGDKQSPIFQDNR Q88943 70 -1 LGGSKSPLFQNPQ O72716 69 -1 LGGSKSPVFQDNR O72711 69 -1 LGDKKSPVFQDVQ Q96611 66 -1 LEGSKSPLFQDPQ O73495 69 -1 LGDSKSPVFQDIQ VAL2_ABMVW 66 -1 LGDRKSPIFQDKP O41337 66 -1 LGNTKSPLFQDVQ O36623 66 -1 LGDNKSPLFQDNQ VAL2_TGMV 66 -1 LGARKSPLFQDTQ VAL2_TMOV 66 -1 LGDRKSPLFQDIQ O91198 66 -1 LGADKSPLFQDSR O56817 70 -1 LGGTKSPLFQDNA Q01732 109 -1 LGGSKSPLFQDVQ VAL2_SLCV 68 -1 LGDRKSPLFHDVP P89125 66 -1 LGGTKSPLFQDHA Q67582 109 -1 LGGTKSPLFQDHA VAL2_BGMV 109 -1 LGGTKSPLFQDHA Q67589 109 -1 LGDIKSPLFQDVQ Q67577 66 -1 LGGSKSPIFQDTT Q96703 66 -1 LRDNKSPIFQDNQ Q88950 70 -1 LRDNKSPIFHDNQ Q67619 70 -1 LRDNKSPIFHDNQ VAL2_TYLCU 70 -1 LRDNKSPIFHDNQ VAL2_TYLCM 70 -1 LGNKQSPVFHNHQ VAL2_CLVN 70 -1 LGNSKSPVFQNFE O91273 69 -1 LGGSKSPIFQDTA Q88884 66 -1 LGASKSPIFQNTA VAL2_PHUV 75 -1 LGGTKSPLFQDHS VAL2_ICMV 70 -1 LGNKQSPVFHNHQ VAL2_CLVK 70 -1 LGNSKSPVFQNFE Q88538 69 -1 LGNSKSPVFQNFE Q88548 69 -1 LDNQKSPIFQDNQ Q65320 70 -1 LEGSKSPLFQDHK VAL2_TYLCA 70 -1 LDSQQSPLFQNNT O12279 70 -1 GEMCOATAL24 Length of motif = 15 Motif number = 4 Geminivirus AL2 motif IV - 2 PCODE ST INT LPNLDDLTPSDWSFL O72720 117 35 LPNLDDLTPSDWSFL O72724 117 35 LPNLDDLTPSDWSFF O72706 117 35 LPSLDDIDDSFWVDL Q67561 113 34 LPNLDDLTASDWSFL Q98742 117 35 LPNLDDLTASDWSFL Q88558 117 35 LPNLDDLTPSDWSFL O72715 117 35 LPNLDDITASDWSFL O38543 118 35 LPNLDDITASDWSFL VAL2_TYLCV 118 35 LPNLDDFTASDWSFL O56991 117 35 LPSLDDIDDSFWVDL O71204 113 34 LPSLDDIDNSFWVDL P89130 113 34 LPSLDDIDDSFWVNL O71962 113 34 LPSLDDIDDSFWVEL VAL2_PYMVV 113 34 FPNLDDLTASDWSFL O72708 117 35 LPNLDDLTPSDWSFL O73501 117 35 LPNLDDITASDWSFL Q88943 118 35 LPNLDDLIPSDWSFL O72716 117 35 FPNLDDLTASDWSFL O72711 117 35 LPSLDDIDESFWVNL Q96611 113 34 LPNLDDLTPSDWSFL O73495 117 35 LPSLDDFDDSFWVNL VAL2_ABMVW 113 34 LPSLDDIDDSFWVEL O41337 113 34 LPSLDDIDDSFWINI O36623 113 34 LPSMDDIDDSFWENL VAL2_TGMV 113 34 LPSLDDVDDSFWINL VAL2_TMOV 113 34 LPSVDDIDDSFWVNL O91198 113 34 LPSLDDLTSSDWSFL O56817 118 35 LPSLDDIDSSFWDDI Q01732 156 34 LPSLDGIDSSFWDDI VAL2_SLCV 115 34 LPSLDDIDNGFWVDL P89125 113 34 LPSLDDIDSSFWDDI Q67582 156 34 LPSLDDIDSSFWDDI VAL2_BGMV 156 34 LPSLDDIDSSFWDDI Q67589 156 34 FPSLDDISSSFWDDI Q67577 113 34 LPSLDDFDESFWADI Q96703 113 34 LQHLDDLTVSDWSFF Q88950 118 35 LPHLDDLTVSDWSFF Q67619 118 35 LPHLDDLTVSDWSFF VAL2_TYLCU 118 35 LPHLDDLTVSDWSFF VAL2_TYLCM 118 35 LQDLDDLTASDWSFL VAL2_CLVN 118 35 FPNLDGLTPSDWDFL O91273 117 35 FPSLDDFDDSFWDDI Q88884 113 34 LPSLDDVDDDFWADL VAL2_PHUV 122 34 FQGLDDLTASDLAFL VAL2_ICMV 118 35 LPDLDNLTASDWSFL VAL2_CLVK 118 35 FQNLDGLTPSDWDFL Q88538 117 35 FQNLDGLTPSDWDFL Q88548 117 35 LPDLDSLTTSDLAFL Q65320 118 35 LHSFHSLTTSDLAFL VAL2_TYLCA 118 35 LPDLDSFTTSDLAFL O12279 118 35

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